Which fungi can harm cannabis crops?

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  • High humidity, combined with certain environmental factors (high temperature, light, and poor air circulation), creates conditions that can promote the growth of fungi harmful to cannabis cultivation.
  • Fungi often appear unexpectedly on your cannabis plants; they spread quickly and can significantly impact your harvest by causing various problems if you don’t manage to eliminate them in time.
  • It is essential to remain highly vigilant, as the initial symptoms are often hidden either underground near the roots, within a canopy with overly dense foliage, or even on the heads scattered throughout the plant. It is important to know how to identify the fungus attacking our crops, but also—and above all—to apply the right treatment at the right time. Follow the guide!

First and foremost, it’s important to know that the appearance of harmful fungi isn’t a matter of chance; it can usually be prevented by taking certain preventive measures, as outlined below:

Maintaining a clean indoor growing environment is essential for preventing the unwanted growth of any pathogenic fungi. For this reason, we recommend thoroughly cleaning your growing space (floor, walls, and ceiling) between each growing cycle, as well as all tools and equipment that come into direct contact with your plants.

To do this, you can use either a 5% bleach solution or fungicides diluted to the appropriate concentration. During cultivation, be sure to keep the area clean. To prevent potential contamination from outside sources, you should change your clothes to avoid contamination from spores carried in from outdoors.

When it comes to outdoor gardening, managing this aspect is much more complicated; however, if you clean your tools thoroughly, this will help drastically reduce the problem.
Above all, you must remove and dispose of both fallen leaves and plant debris, as they provide an ideal environment for the growth and development of these fungi.

Be sure to always maintain environmental conditions (humidity and temperature) that are conducive to the proper development of each stage of the plant’s growth, whether during the vegetative phase or flowering. This type of fungus thrives when environmental conditions are favorable, that is, when both temperature and humidity are high, and air circulation is insufficient. If you have the appropriate climate control equipment to ensure your grow space is well-ventilated, that humidity is around 50–55% during flowering, and that the temperature in your space is between 23 and 26 °C, then you have no reason to worry.

When it comes to outdoor gardening, the most important factor is choosing high-quality seeds that can withstand these types of challenges. Simply put, if you live in a region with high rainfall and early drops in temperature, you’ll need to carefully select the variety or varieties to grow—ones with a short flowering period—to prevent potential fungal attacks and give your crop the best chance of success.

If you are working with cuttings, it is crucial to ensure that they come from a healthy mother plant. Otherwise, all the work done during the preparation phase will be for nothing, and you may see certain fungal problems develop in the short term.

By following these simple guidelines, you can significantly reduce the likelihood of their appearance. Since they originate from highly volatile spores that can settle and grow in even the tiniest spaces, it is impossible to guarantee their complete eradication.

The most important thing is to detect their presence early enough in the crop so that their impact on each cannabis plant is as minimal as possible, eliminating them as quickly as possible to ultimately prevent a buildup of problems that could be more serious for the future of our precious harvest.

Below, you’ll learn which fungi can harm cannabis plants; we’ll also provide information on how to accurately identify each one and how to effectively eliminate them.

Powdery mildew

Powdery mildew is certainly one of the most common fungi affecting cannabis cultivation, as it requires a temperature of at least 20°C and high humidity to thrive. Sudden temperature fluctuations facilitate its growth and reproduction. It is fairly easy to detect a powdery mildew infestation on a cannabis plant, and applying the appropriate treatment is straightforward, but you must act before it is too late.

Read this article: How to Choose a Pot for Growing Cannabis?

As with most pathogenic fungi, it is better for them to appear during the growing season rather than during flowering, because otherwise the flower heads could become contaminated and unfit for consumption—or even dangerous to your health, particularly to your respiratory system.

How can you detect powdery mildew?

You’ll be able to tell that your crop is infected with powdery mildew, as this fungus typically appears on the leaves and buds of cannabis plants. You’ll first notice scattered, whitish, powdery circular spots covering the surface of the upper parts of the buds and leaves. As the infection spreads, you’ll see these characteristic white spots multiply in number. In advanced stages, the stems and buds will be more severely affected.

Treatment of Powdery Mildew

It is far from being the hardest fungus to eliminate, but action must be taken as soon as it first appears, because if it manages to reach our prized, high-quality heads, they will become unfit for consumption. To prevent the development of this fungus, you can apply a foliar spray of either sulfur or copper sulfate, a horsetail decoction, or even baking soda—the latter being very effective and easy to prepare.

Simply add three level tablespoons of baking soda to one liter of water, then add two tablespoons of olive oil, mix thoroughly, and spray for a curative effect. Propolis is also effective as a preventive measure. The action of Trichoderma harzianum, a beneficial (antagonistic) fungus, neutralizes the growth and development of certain harmful fungi. We recommend adding it when preparing your potting mix and during repotting.

If you choose to use chemical fungicides, we recommend applying them with the utmost caution, especially in a confined indoor environment, as it will be essential to wear appropriate protective gear (cartridge respirator, gloves, coveralls, suitable footwear, etc.) to protect your health. Please read the instructions for use carefully regarding the appropriate dosage, while also adhering to safety guidelines, particularly the restricted access period for the contaminated growing area. Any crop that is severely affected must be discarded without hesitation.

 Botrytis

How can you tell if Botrytis is present?

Botrytis, or gray mold, is a very common harmful fungus in cannabis cultivation. Fortunately, it is easily identifiable because it causes necrosis throughout all parts of the affected plants (roots, stems, leaves, and buds). Its characteristic appearance resembles that of a spider’s cocoon, as it features a fairly dense, filamentous growth with a color ranging from brown to gray.

The affected parts are also very dry and appear dead. The insidious thing about Botrytis is that it spreads incredibly quickly; it can wipe out your entire cannabis crop in just a few days, which is why you need to act immediately.

Treatment of Botrytis

If you want to prevent Botrytis from appearing on your cannabis plants, you’ll need to carefully control the humidity levels indoors, making sure they never exceed 60% during the last four weeks of flowering, as Botrytis always appears during this period.

If this fungus is clearly visible, you should start by removing and discarding all affected parts of the plant, including a few extra centimeters of the healthy portion, as a precaution for your health and to prevent the fungus from spreading to other parts of the plant or to other plants. It is best to avoid consuming flower heads affected by Botrytis to protect your respiratory system.

After removing the contaminated parts and placing them outside the growing area, be sure to thoroughly ventilate the room to remove airborne spores and effectively lower the humidity level, aiming for an air humidity of around 50 to 60% maximum, with an ambient temperature of 26 or 27 °C to sanitize the area. If Botrytis suddenly appears during the final days of flowering, with rapid and unfavorable progression both indoors and outdoors, do not hesitate; please harvest your plants as soon as possible.

If you lack both the physical and material resources to stop the spread of this devastating fungal infection, then the only way to halt its progression is to permanently remove all the cannabis plants. In the case of a fairly severe infestation, please spray beneficial antagonistic fungi such as Trichoderma harzianum, Ulocladium atrum orGliocladium Roseumdirectlyonto the plants. These should effectively curb the overall development of Botrytis. 

Read this article What are the common pests in cannabis cultivation?

We recommend against using chemicals to treat plants affected by Botrytis, for the simple reason that these fungicides leave chemical residues that are harmful to human health.

It’s easy to see that all fertilizers containing the nutrients essential for the optimal growth of our beloved cannabis plants—as well as the plant protection products we use to protect them—will end up, at least in part, in the plant tissue of the delicious, high-quality flowers we grow for our own consumption. As the old saying goes, prevention is better than cure, so it’s important to closely monitor the relevant environmental factors (temperature, humidity) and maintain impeccable hygiene.

Seedling blight or "Damping Off"

Damping-off, also known as “Damping Off” in English, is a fungal disease caused by a fungus called Pythium. It affects young plants at a very early stage, most often when they are still young seedlings. Pythium most commonly appears in unsterilized growing media or soil that is excessively moist and poorly aerated.

How can you tell if seedlings are wilting?

Pythium typically affects the lower part of the cannabis plant—that is, the lower section of the stem near the ground. The typical symptom of this fungal disease is a significant and abnormal constriction of the lower stem, which gradually weakens until it bends completely.

What happens next is quite logical: since the plant is no longer receiving nutrients—because the flow of sap containing water and nutrients is blocked at that specific point—it can no longer feed itself, which will quickly halt its growth and eventually lead to its death in the short term. Pythium is a vicious pathogen because it can lie dormant in high-quality cannabis seeds for a long time and develop when we germinate those same seeds. 

Treatment for damping-off 

Unfortunately, damping-off—which is directly caused by the presence of Pythium—is difficult to control within a population of young plants. This is simply because, at this stage of growth, young seedlings have a weak and fragile immune system, which will lead to their complete loss in most cases.

However, you will need to act quickly by removing any affected young plants in the surrounding area to prevent the spread of Pythium within the space. It is possible to apply a specific treatment by spraying orlightly watering the substrate with Pythium oligandrum, a beneficial fungus that acts as an antagonist against damping-off.

Late blight (Phytophthora infestans)

The downy mildew pathogen, Phytophthora infestans, is a fungal disease that exhibits characteristics nearly identical to those of powdery mildew, though there are a few distinguishing features that must be taken into account to differentiate between the two conditions.

How can you tell if there is downy mildew?

Signs of a fungal disease such as downy mildew can be seen on the stem, the upper surfaces of the leaves, and the flowers, but not only there; unlike powdery mildew, we also observe its presence and development on the undersides of the leaves. The primary symptoms indicating a downy mildew infection are small spots ranging from yellowish to translucent on the leaves, and a thin layer of white powder similar to that of powdery mildew may also be observed. However, note that this last symptom does not necessarily appear when the disease occurs.

Treatment of Downy Mildew

To gradually reduce the spread of downy mildew and with the goal of completely eliminating it in the short term, you must prune and remove the affected parts of the plants and promptly dispose of them at a waste disposal site located a safe distance from where you grow your crops. It is also important to avoid overcrowding your plants in your growing space; instead, you should ensure good air circulation and ventilation throughout the entire growing area to prevent downy mildew from developing.

An effective way to actively combat downy mildew is to treat the plants with a contact fungicide such as Cymoxanil, Chlorothalonil, or Imazalil. It is also possible to apply a systemic chemical fungicide such as Myclobutanil, Metalaxyl, Fosetyl-Al, Triadimenol, Tebuconazole, or Bitertanol.

Bordeaux mixture is also an effective treatment against this pathogen. We recommend that you always carefully review the instructions for use, as well as the safety precautions required by law, before applying this type of pesticide. If the spread of the disease is not stopped in time, it can easily lead to an infestation of pests and, at the same time, a significant loss of your total cannabis crop yield.

Read this article Optimizing light exposure for germinated cannabis seeds

Fusarium (oxysporum)

Fusarium is a fungal disease, meaning it belongs to a group that includes a wide variety of filamentous fungi that grow in the soil or growing medium. Fusarium is a saprophytic parasitic fungus, which means it feeds on the decomposing remains of other organisms. Fusarium causes root rot and also attacks the base (lower part) of the plant’s stem.

How can you detect the presence of Fusarium?

The main symptoms we can observe during a Fusarium infection are rot at the base of the stems, as well as small necrotic spots on older leaves, such as those on the lower part of the plant. It is also possible to see some leaves curling upward, followed by a gradual yellowing of these leaves, which will lead to their wilting and eventual death. We can also detect the presence of Fusarium by the lignification of the stems; a good tip to confirm with certainty that plants are indeed suffering from Fusarium wilt is to make a cross-section of the stem.

If you notice that the inside is reddish-brown, then you’ll have your confirmation. In any case, it’s clear that the plant’s immune system is weakened, as the plants have a generally deteriorated appearance. Depending on the plant’s stage of development, you’ll see either stunted growth or flowering that results in a significant loss of final bud yield. This unfavorable situation could also lead to the presence of pests at the same time.

Treatment of Fusarium

If you want to prevent a Fusarium infection, you’ll need to keep the substrate temperature below 29°C, as Fusarium thrives in acidic soil with a hot, dry climate. Maintain impeccable hygiene as much as possible, since a clean space free of plant debris will deter this unwanted guest from entering your indoor garden. We recommend avoiding fertilizers with excessively high nitrogen concentrations; however, be sure to add all the necessary nutrients to your nutrient solution to meet the needs of your cannabis plants.

You can also add 20 to 30 cc of hydrogen peroxide to your nutrient solution once a week, as it contains hydrogen peroxide, which helps eradicate Fusarium while improving oxygenation of your growing medium at the same time. It is also possible to add an antagonistic fungus such as Trichoderma harzianum to your growing medium, which naturally combats and eliminates the harmful effects of Fusarium.

Be sure to provide good airflow around the base of your plants, ensure effective air circulation throughout the entire space, and avoid stagnant air pockets. Be sure to spray organic fungicides, such as horsetail or nettle infusions, before sowing your cannabis seeds

 Alternaria

Alternaria is a fungal disease belonging to the Pleosporaceae family, which comprises at least 44 identified species. Its primary cause is the decomposition of organic matter. This explains why it affects more than 20% of agricultural crops worldwide. Alternaria can cause allergic or respiratory problems in humans (bronchial asthma, rhinitis, etc.). It appears that 10 to 15% of the Earth’s total population is affected by Alternaria.

How can you tell if Alternaria is present?

Signs of a fungal disease such as Alternaria include dry, circular spots that are quite dark gray, brown, or black in color, appearing on the leaves and even on the stems of cannabis plants. These spots have a necrotic appearance, which impairs photosynthesis because the leaves’ light-capturing surface area is reduced.

Alternaria causes a gradual slowdown in the plant’s growth by significantly weakening its immune system. This generally gives the impression that the plants are not absorbing water and nutrients properly, as their physical appearance suggests a possible deficiency in various minerals.

Treatment for Alternaria

To prevent Alternaria from developing in your cannabis crop, it is essential to always keep your growing area as clean as possible, and above all , to avoid leaving decomposing organic matter (plant debris) lying around. You must ensure that the area is well and evenly ventilated, and strive to maintain stable environmental conditions by minimizing fluctuations in humidity and temperature as much as possible.

Please water regularly, using just the right amount of water, fertilizer, or nutrients to meet your garden’s needs. Don’t hesitate to apply preventive treatments using a broad-spectrum fungicide. One last thing: Be sure never to reuse old potting mix.

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